![]() All nodes animated by default on animate enabled. clusterMaker2 provides the capability to create a new network based on distances computed by the correlations between node attributes. = function ( node, i ) return true, // a function that determines whether the node should be animated. You can also select specific subnetworks and rotate them by checking Selected only. In the opened window, uncheck the Selected Only box to rotate the entire network and move the blue bar to 90. = undefined, // easing of animation if enabled To rotate the entire molecular network choose the Layout tab and click Node Layout tool. Integer duration of animation in ms if enabled function(a, b) return a.data('weight') - b.data('weight')īoolean whether to transition the node positions Js a sorting function to order the nodes e.g. Js function( node ), // returns row, col for element Their purpose is to position the nodes of a graph in two-dimensional or three-dimensional space so that all the edges are of more or less equal length and. = undefined, // Applies a multiplicative factor (>0) to expand or compress the overall area that the nodes take upīoolean, uses all available space on false, uses minimal space on true = false, // Excludes the label when calculating node bounding boxes for the layout algorithm Integer pixels extra spacing around nodes when avoidOverlap = true = undefined, // constrain layout bounds x1, y1, x2, y2 or x1, y1, w, hīoolean prevents node overlap, may overflow boundingBox if not enough space )īoolean whether to fit the viewport to the graph ) # S3 method for class 'cytoscape' layout ( cytoscape, name = NULL, fit = TRUE, padding = 30, boundingBox = NULL, avoidOverlap = TRUE, avoidOverlapPadding = 10, nodeDimensionsIncludeLabels = FALSE, spacingFactor = NULL, condense = FALSE, rows = NULL, cols = NULL, position = NULL, sort = NULL, animate = FALSE, animationDuration = 500, animationEasing = NULL, animateFilter = NULL, ready = NULL, stop = NULL, transform = NULL. Layout ( cytoscape, name = NULL, fit = TRUE, padding = 30, boundingBox = NULL, avoidOverlap = TRUE, avoidOverlapPadding = 10, nodeDimensionsIncludeLabels = FALSE, spacingFactor = NULL, condense = FALSE, rows = NULL, cols = NULL, position = NULL, sort = NULL, animate = FALSE, animationDuration = 500, animationEasing = NULL, animateFilter = NULL, ready = NULL, stop = NULL, transform = NULL. ![]()
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